6GZK | Motifs

Loop id	Location	Annotation; motif group	Mapped info
HL_6GZK_001	1/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_002	1/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_003	2/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_004	2/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_005	3/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_006	3/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_007	4/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_008	4/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_009	5/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_010	5/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_011	6/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_012	6/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_013	7/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_014	7/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_015	8/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_016	8/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_017	9/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_018	9/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5
HL_6GZK_019	10/A/13:18	GNRA	geometric HL_4V88_218 NA
HL_6GZK_020	10/A/30:35	UNCG	geometric HL_1I6U_001 HL_61337.5

No problematic loops

Loop id	Location	Annotation; motif group	Mapped info
IL_6GZK_001	1/A/5:6, 1/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_002	2/A/5:6, 2/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_003	3/A/5:6, 3/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_011	4/A/5:6, 4/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_005	5/A/5:6, 5/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_006	6/A/5:6, 6/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_007	7/A/5:6, 7/A/42:44	Major groove intercalation	geometric IL_4WF9_071 IL_71421.4
IL_6GZK_012	8/A/5:6, 8/A/42:44	Multiple bulged bases	geometric IL_4V88_392 NA
IL_6GZK_009	9/A/5:6, 9/A/42:44	Multiple bulged bases	geometric IL_5WLH_001 IL_71421.4
IL_6GZK_010	10/A/5:6, 10/A/42:44	Major groove intercalation	geometric IL_4WF9_071 IL_71421.4

#	loop id	Problem	Sequence
	IL_6GZK_004	Deprecated	No text annotation
	IL_6GZK_008	Deprecated	No text annotation

Loop id	Location	Annotation; motif group
J3_6GZK_001	1/A/7:9, 1/A/22:27, 1/A/38:41	No text annotation
J3_6GZK_002	2/A/7:9, 2/A/22:27, 2/A/38:41	No text annotation
J3_6GZK_003	3/A/7:9, 3/A/22:27, 3/A/38:41	No text annotation
J3_6GZK_004	4/A/7:9, 4/A/22:27, 4/A/38:41	No text annotation
J3_6GZK_005	5/A/7:9, 5/A/22:27, 5/A/38:41	No text annotation
J3_6GZK_006	6/A/7:9, 6/A/22:27, 6/A/38:41	No text annotation
J3_6GZK_007	7/A/7:9, 7/A/22:27, 7/A/38:41	No text annotation
J3_6GZK_008	8/A/7:9, 8/A/22:27, 8/A/38:41	No text annotation
J3_6GZK_009	9/A/7:9, 9/A/22:27, 9/A/38:41	No text annotation
J3_6GZK_010	10/A/7:9, 10/A/22:27, 10/A/38:41	No text annotation

No problematic loops

Coloring options: Nucleotide numbers

6GZK Hairpin, Internal, and multi-helix Junction Loop Motifs