HL_6GZX_008

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6GZX|1|A1|C|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_008 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3078

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6GZX|1|A1|C|236
6GZX|1|A1|G|237
6GZX|1|A1|G|238
6GZX|1|A1|C|239
6GZX|1|A1|G|240
6GZX|1|A1|A|241
6GZX|1|A1|G|242

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain K1

50S ribosomal protein L15

Chain W1

50S ribosomal protein L28

Chain d1

50S ribosomal protein L35