HL_6GZX_012

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6GZX|1|A1|G|354, 6GZX|1|A1|A|355, 6GZX|1|A1|A|356

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_012 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3732

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

6GZX|1|A1|G|352
6GZX|1|A1|U|353
6GZX|1|A1|G|354
6GZX|1|A1|A|355
6GZX|1|A1|A|356
6GZX|1|A1|A|357
6GZX|1|A1|G|358
6GZX|1|A1|C|359
6GZX|1|A1|C|360

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4

Chain T1

50S ribosomal protein L24