HL_6GZX_017

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCGCAAGG

Length

8 nucleotides

Bulged bases

6GZX|1|A1|C|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_017 not in the Motif Atlas

Geometric match to HL_9PN5_103

Geometric discrepancy: 0.3851

The information below is about HL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22758.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6GZX|1|A1|C|569
6GZX|1|A1|C|570
6GZX|1|A1|G|571
6GZX|1|A1|C|572
6GZX|1|A1|A|573
6GZX|1|A1|A|574
6GZX|1|A1|G|575
6GZX|1|A1|G|576

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain Q1

50S ribosomal protein L21