HL_6GZX_048

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

6GZX|1|A1|G|2264

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_048 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3823

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZX|1|A1|A|2261
6GZX|1|A1|C|2262
6GZX|1|A1|U|2263
6GZX|1|A1|G|2264
6GZX|1|A1|G|2265
6GZX|1|A1|G|2266
6GZX|1|A1|G|2267
6GZX|1|A1|C|2268
6GZX|1|A1|G|2269
6GZX|1|A1|G|2270
6GZX|1|A1|U|2271

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27