HL_6GZX_066

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CCGGUAGCGGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_066 not in the Motif Atlas

Homologous match to HL_7A0S_002

Geometric discrepancy: 0.4118

The information below is about HL_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76590.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6GZX|1|A2|C|85
6GZX|1|A2|C|86
6GZX|1|A2|G|87
6GZX|1|A2|G|88
6GZX|1|A2|U|89
6GZX|1|A2|A|90
6GZX|1|A2|G|91
6GZX|1|A2|C|92
6GZX|1|A2|G|93
6GZX|1|A2|G|94
6GZX|1|A2|G|95

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain S2

50S ribosomal protein L23

Chain T2

50S ribosomal protein L24

Chain X2

50S ribosomal protein L29