HL_6GZX_086
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- GGAUGCAAAC
- Length
- 10 nucleotides
- Bulged bases
- 6GZX|1|A2|U|796, 6GZX|1|A2|C|798, 6GZX|1|A2|A|800, 6GZX|1|A2|A|801
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZX_086 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.4496
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
6GZX|1|A2|G|793
6GZX|1|A2|G|794
6GZX|1|A2|A|795
6GZX|1|A2|U|796
6GZX|1|A2|G|797
6GZX|1|A2|C|798
6GZX|1|A2|A|799
6GZX|1|A2|A|800
6GZX|1|A2|A|801
6GZX|1|A2|C|802
Current chains
- Chain A2
- 23S ribosomal RNA
Nearby chains
- Chain D2
- 50S ribosomal protein L3
- Chain R2
- 50S ribosomal protein L22
- Chain a2
- 50S ribosomal protein L32
- Chain c2
- 50S ribosomal protein L34
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