HL_6GZX_087

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6GZX|1|A2|A|830, 6GZX|1|A2|A|833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_087 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.3367

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6GZX|1|A2|U|828
6GZX|1|A2|G|829
6GZX|1|A2|A|830
6GZX|1|A2|A|831
6GZX|1|A2|A|832
6GZX|1|A2|A|833
6GZX|1|A2|G|834

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2