HL_6GZX_110

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6GZX|1|A2|A|1937

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_110 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2996

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GZX|1|A2|G|1934
6GZX|1|A2|U|1935
6GZX|1|A2|A|1936
6GZX|1|A2|A|1937
6GZX|1|A2|C|1938
6GZX|1|A2|U|1939
6GZX|1|A2|A|1940
6GZX|1|A2|U|1941
6GZX|1|A2|A|1942
6GZX|1|A2|A|1943
6GZX|1|A2|C|1944

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain A4

Small subunit ribosomal RNA; SSU rRNA

Chain V4

Ribosome hibernation promoting factor