HL_6GZX_123

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGCUGAAGAAGGUC

Length

14 nucleotides

Bulged bases

6GZX|1|A2|G|2543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_123 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3931

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6GZX|1|A2|G|2539
6GZX|1|A2|G|2540
6GZX|1|A2|C|2541
6GZX|1|A2|U|2542
6GZX|1|A2|G|2543
6GZX|1|A2|A|2544
6GZX|1|A2|A|2545
6GZX|1|A2|G|2546
6GZX|1|A2|A|2547
6GZX|1|A2|A|2548
6GZX|1|A2|G|2549
6GZX|1|A2|G|2550
6GZX|1|A2|U|2551
6GZX|1|A2|C|2552

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain e2

50S ribosomal protein L36