HL_6GZX_124

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_124 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.2831

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6GZX|1|A2|C|2565
6GZX|1|A2|U|2566
6GZX|1|A2|G|2567
6GZX|1|A2|U|2568
6GZX|1|A2|U|2569
6GZX|1|A2|C|2570
6GZX|1|A2|G|2571

Current chains

Chain A2

23S ribosomal RNA

Nearby chains