HL_6GZX_137

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

6GZX|1|A3|G|261

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_137 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.3851

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6GZX|1|A3|G|254
6GZX|1|A3|G|255
6GZX|1|A3|U|256
6GZX|1|A3|A|257
6GZX|1|A3|A|258
6GZX|1|A3|U|259
6GZX|1|A3|G|260
6GZX|1|A3|G|261
6GZX|1|A3|C|262

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain Q3

30S ribosomal protein S17

Chain T3

30S ribosomal protein S20