HL_6GZX_166

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

6GZX|1|A4|U|208, 6GZX|1|A4|U|209, 6GZX|1|A4|U|210, 6GZX|1|A4|C|212

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_166 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2973

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6GZX|1|A4|G|205
6GZX|1|A4|G|206
6GZX|1|A4|C|207
6GZX|1|A4|U|208
6GZX|1|A4|U|209
6GZX|1|A4|U|210
6GZX|1|A4|G|211
6GZX|1|A4|C|212
6GZX|1|A4|C|213

Current chains

Chain A4

16S ribosomal RNA

Nearby chains