HL_6GZX_174

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6GZX|1|A4|U|602

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_174 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.399

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6GZX|1|A4|G|600
6GZX|1|A4|C|601
6GZX|1|A4|U|602
6GZX|1|A4|C|603
6GZX|1|A4|A|604
6GZX|1|A4|A|605
6GZX|1|A4|C|606

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain P4

30S ribosomal protein S16