HL_6GZX_184

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6GZX|1|A4|G|1076

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_184 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.3641

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6GZX|1|A4|G|1071
6GZX|1|A4|U|1072
6GZX|1|A4|U|1073
6GZX|1|A4|A|1074
6GZX|1|A4|A|1075
6GZX|1|A4|G|1076
6GZX|1|A4|U|1077
6GZX|1|A4|C|1078

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain B4

30S ribosomal protein S2

Chain G4

30S ribosomal protein S7