HL_6GZX_188
3D structure
- PDB id
- 6GZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (ice)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.57 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- 6GZX|1|A4|C|1298, 6GZX|1|A4|A|1299
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZX_188 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.4379
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GZX|1|A4|C|1295
6GZX|1|A4|U|1296
6GZX|1|A4|G|1297
6GZX|1|A4|C|1298
6GZX|1|A4|A|1299
6GZX|1|A4|A|1300
6GZX|1|A4|C|1301
6GZX|1|A4|C|1302
6GZX|1|A4|C|1303
6GZX|1|A4|G|1304
Current chains
- Chain A4
- 16S ribosomal RNA
Nearby chains
- Chain M4
- 30S ribosomal protein S13
- Chain N4
- 30S ribosomal protein S14 type Z
- Chain S4
- 30S ribosomal protein S19
- Chain U4
- 30S ribosomal protein Thx
- Chain Z2
- 50S ribosomal protein L31
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