HL_6GZX_194

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CAUUCCG

Length

7 nucleotides

Bulged bases

6GZX|1|B2|U|43, 6GZX|1|B2|C|44, 6GZX|1|B2|C|45

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_194 not in the Motif Atlas

Homologous match to HL_4V9F_071

Geometric discrepancy: 0.3547

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59381.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6GZX|1|B2|C|40
6GZX|1|B2|A|41
6GZX|1|B2|U|42
6GZX|1|B2|U|43
6GZX|1|B2|C|44
6GZX|1|B2|C|45
6GZX|1|B2|G|46

Current chains

Chain B2

5S ribosomal RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain F2

50S ribosomal protein L5

Chain N2

50S ribosomal protein L18

Chain Z2

50S ribosomal protein L31