HL_6GZX_258

3D structure

PDB id

6GZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (ice)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.57 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

6GZX|1|A3|C|323, 6GZX|1|A3|C|325, 6GZX|1|A3|G|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZX_258 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.2512

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GZX|1|A3|C|315
6GZX|1|A3|A|316
6GZX|1|A3|C|317
6GZX|1|A3|U|318
6GZX|1|A3|G|319
6GZX|1|A3|A|320
6GZX|1|A3|G|321
6GZX|1|A3|A|322
6GZX|1|A3|C|323
6GZX|1|A3|A|324
6GZX|1|A3|C|325
6GZX|1|A3|G|326
6GZX|1|A3|G|327
6GZX|1|A3|G|328

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain P3

30S ribosomal protein S16

Chain T3

30S ribosomal protein S20