HL_6GZZ_018

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUUGAG

Length

7 nucleotides

Bulged bases

6GZZ|1|A1|U|640, 6GZZ|1|A1|G|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_018 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3354

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6GZZ|1|A1|C|637
6GZZ|1|A1|G|638
6GZZ|1|A1|U|639
6GZZ|1|A1|U|640
6GZZ|1|A1|G|641
6GZZ|1|A1|A|642
6GZZ|1|A1|G|643

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain E1

50S ribosomal protein L4