HL_6GZZ_033

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_033 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.3833

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

6GZZ|1|A1|C|1411
6GZZ|1|A1|G|1412
6GZZ|1|A1|A|1413
6GZZ|1|A1|A|1414
6GZZ|1|A1|A|1415
6GZZ|1|A1|G|1416

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain W1

50S ribosomal protein L28

Chain c1

50S ribosomal protein L34