HL_6GZZ_042
3D structure
- PDB id
- 6GZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 100S ribosome (amc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.13 Å
Loop
- Sequence
- GUUUACCAAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 6GZZ|1|A1|A|1813, 6GZZ|1|A1|C|1814, 6GZZ|1|A1|C|1815, 6GZZ|1|A1|A|1819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6GZZ_042 not in the Motif Atlas
- Homologous match to HL_7A0S_045
- Geometric discrepancy: 0.2996
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_60266.1
- Basepair signature
- cWW-cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GZZ|1|A1|G|1809
6GZZ|1|A1|U|1810
6GZZ|1|A1|U|1811
6GZZ|1|A1|U|1812
6GZZ|1|A1|A|1813
6GZZ|1|A1|C|1814
6GZZ|1|A1|C|1815
6GZZ|1|A1|A|1816
6GZZ|1|A1|A|1817
6GZZ|1|A1|A|1818
6GZZ|1|A1|A|1819
6GZZ|1|A1|A|1820
6GZZ|1|A1|C|1821
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain C1
- 50S ribosomal protein L2
- Chain c1
- 50S ribosomal protein L34
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