HL_6GZZ_044

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGUGCAAGCC

Length

10 nucleotides

Bulged bases

6GZZ|1|A1|C|1899

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_044 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3048

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6GZZ|1|A1|G|1895
6GZZ|1|A1|G|1896
6GZZ|1|A1|U|1897
6GZZ|1|A1|G|1898
6GZZ|1|A1|C|1899
6GZZ|1|A1|A|1900
6GZZ|1|A1|A|1901
6GZZ|1|A1|G|1902
6GZZ|1|A1|C|1903
6GZZ|1|A1|C|1904

Current chains

Chain A1

23S ribosomal RNA

Nearby chains