HL_6GZZ_052

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGCAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_052 not in the Motif Atlas

Homologous match to HL_7A0S_055

Geometric discrepancy: 0.2454

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

6GZZ|1|A1|C|2338
6GZZ|1|A1|G|2339
6GZZ|1|A1|C|2340
6GZZ|1|A1|A|2341
6GZZ|1|A1|A|2342
6GZZ|1|A1|G|2343
6GZZ|1|A1|G|2344
6GZZ|1|A1|G|2345

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain F1

50S ribosomal protein L5

Chain L1

50S ribosomal protein L16

Chain V1

50S ribosomal protein L27