HL_6GZZ_076

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

6GZZ|1|A2|G|354, 6GZZ|1|A2|A|355, 6GZZ|1|A2|A|356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_076 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.3538

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6GZZ|1|A2|G|352
6GZZ|1|A2|U|353
6GZZ|1|A2|G|354
6GZZ|1|A2|A|355
6GZZ|1|A2|A|356
6GZZ|1|A2|A|357
6GZZ|1|A2|G|358
6GZZ|1|A2|C|359
6GZZ|1|A2|C|360

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain T2

50S ribosomal protein L24