HL_6GZZ_091

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

6GZZ|1|A2|U|1005, 6GZZ|1|A2|C|1008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_091 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.4235

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6GZZ|1|A2|C|1002
6GZZ|1|A2|G|1003
6GZZ|1|A2|A|1004
6GZZ|1|A2|U|1005
6GZZ|1|A2|A|1006
6GZZ|1|A2|A|1007
6GZZ|1|A2|C|1008
6GZZ|1|A2|G|1009

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain L2

50S ribosomal protein L16