HL_6GZZ_108

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GUUUACCAAAAAC

Length

13 nucleotides

Bulged bases

6GZZ|1|A2|A|1813, 6GZZ|1|A2|C|1814, 6GZZ|1|A2|C|1815, 6GZZ|1|A2|A|1819

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_108 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2864

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_60266.1

Basepair signature

cWW-cWW-tWH-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GZZ|1|A2|G|1809
6GZZ|1|A2|U|1810
6GZZ|1|A2|U|1811
6GZZ|1|A2|U|1812
6GZZ|1|A2|A|1813
6GZZ|1|A2|C|1814
6GZZ|1|A2|C|1815
6GZZ|1|A2|A|1816
6GZZ|1|A2|A|1817
6GZZ|1|A2|A|1818
6GZZ|1|A2|A|1819
6GZZ|1|A2|A|1820
6GZZ|1|A2|C|1821

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain R2

50S ribosomal protein L22

Chain c2

50S ribosomal protein L34