HL_6GZZ_118

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CUGCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_118 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.318

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6GZZ|1|A2|C|2370
6GZZ|1|A2|U|2371
6GZZ|1|A2|G|2372
6GZZ|1|A2|C|2373
6GZZ|1|A2|A|2374
6GZZ|1|A2|A|2375
6GZZ|1|A2|G|2376

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain K2

50S ribosomal protein L15

Chain V2

50S ribosomal protein L27

Chain d2

50S ribosomal protein L35