HL_6GZZ_122

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

6GZZ|1|A2|G|2543, 6GZZ|1|A2|A|2545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_122 not in the Motif Atlas

Geometric match to HL_7RQB_009

Geometric discrepancy: 0.2926

The information below is about HL_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89098.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6GZZ|1|A2|U|2542
6GZZ|1|A2|G|2543
6GZZ|1|A2|A|2544
6GZZ|1|A2|A|2545
6GZZ|1|A2|G|2546
6GZZ|1|A2|A|2547
6GZZ|1|A2|A|2548
6GZZ|1|A2|G|2549

Current chains

Chain A2

23S ribosomal RNA

Nearby chains

Chain G2

50S ribosomal protein L6

Chain e2

50S ribosomal protein L36