HL_6GZZ_135

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGGUAAUGGCC

Length

11 nucleotides

Bulged bases

6GZZ|1|A3|G|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_135 not in the Motif Atlas

Geometric match to HL_3TUP_001

Geometric discrepancy: 0.3848

The information below is about HL_3TUP_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A3|G|253
6GZZ|1|A3|G|254
6GZZ|1|A3|G|255
6GZZ|1|A3|U|256
6GZZ|1|A3|A|257
6GZZ|1|A3|A|258
6GZZ|1|A3|U|259
6GZZ|1|A3|G|260
6GZZ|1|A3|G|261
6GZZ|1|A3|C|262
6GZZ|1|A3|C|263

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain Q3

30S ribosomal protein S17

Chain T3

30S ribosomal protein S20