HL_6GZZ_153

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_153 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3644

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6GZZ|1|A3|G|1146
6GZZ|1|A3|C|1147
6GZZ|1|A3|G|1148
6GZZ|1|A3|A|1149
6GZZ|1|A3|A|1150
6GZZ|1|A3|A|1151
6GZZ|1|A3|G|1152
6GZZ|1|A3|C|1153

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain B3

30S ribosomal protein S2

Chain G3

30S ribosomal protein S7

Chain X3

Ribosome hibernation promoting factor