HL_6GZZ_154

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

6GZZ|1|A3|C|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_154 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.3305

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6GZZ|1|A3|G|1246
6GZZ|1|A3|G|1247
6GZZ|1|A3|C|1248
6GZZ|1|A3|A|1249
6GZZ|1|A3|A|1250
6GZZ|1|A3|C|1251

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain M3

30S ribosomal protein S13

Chain U3

30S ribosomal protein Thx