HL_6GZZ_161

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_161 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.2177

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GZZ|1|A4|G|152
6GZZ|1|A4|G|153
6GZZ|1|A4|A|154
6GZZ|1|A4|A|155
6GZZ|1|A4|A|156
6GZZ|1|A4|C|157

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain O2

50S ribosomal protein L19

Chain T4

30S ribosomal protein S20