HL_6GZZ_165

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

6GZZ|1|A4|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_165 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.2628

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6GZZ|1|A4|C|315
6GZZ|1|A4|A|316
6GZZ|1|A4|C|317
6GZZ|1|A4|U|318
6GZZ|1|A4|G|319
6GZZ|1|A4|A|320
6GZZ|1|A4|G|321
6GZZ|1|A4|A|322
6GZZ|1|A4|C|323
6GZZ|1|A4|A|324
6GZZ|1|A4|C|325
6GZZ|1|A4|G|326
6GZZ|1|A4|G|327
6GZZ|1|A4|G|328

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain P4

30S ribosomal protein S16

Chain T4

30S ribosomal protein S20