HL_6GZZ_171

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

6GZZ|1|A4|U|602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_171 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.525

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6GZZ|1|A4|G|600
6GZZ|1|A4|C|601
6GZZ|1|A4|U|602
6GZZ|1|A4|C|603
6GZZ|1|A4|A|604
6GZZ|1|A4|A|605
6GZZ|1|A4|C|606

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain D4

30S ribosomal protein S4

Chain P4

30S ribosomal protein S16