HL_6GZZ_173

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6GZZ|1|A4|A|773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_173 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.3305

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6GZZ|1|A4|G|769
6GZZ|1|A4|A|770
6GZZ|1|A4|U|771
6GZZ|1|A4|U|772
6GZZ|1|A4|A|773
6GZZ|1|A4|G|774
6GZZ|1|A4|A|775
6GZZ|1|A4|U|776
6GZZ|1|A4|A|777
6GZZ|1|A4|C|778
6GZZ|1|A4|C|779

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain K4

30S ribosomal protein S11

Chain V4

Ribosome hibernation promoting factor