HL_6GZZ_230

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

GCUAACGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_230 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2366

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

6GZZ|1|A4|G|838
6GZZ|1|A4|C|839
6GZZ|1|A4|U|840
6GZZ|1|A4|A|841
6GZZ|1|A4|A|842
6GZZ|1|A4|C|843
6GZZ|1|A4|G|844
6GZZ|1|A4|C|845

Current chains

Chain A4

16S ribosomal RNA

Nearby chains

Chain E4

30S ribosomal protein S5

Chain H4

30S ribosomal protein S8