HL_6GZZ_250

3D structure

PDB id

6GZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 100S ribosome (amc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.13 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

6GZZ|1|A3|A|1062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6GZZ_250 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.4835

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6GZZ|1|A3|C|1058
6GZZ|1|A3|G|1059
6GZZ|1|A3|U|1060
6GZZ|1|A3|G|1061
6GZZ|1|A3|A|1062
6GZZ|1|A3|G|1063

Current chains

Chain A3

16S ribosomal RNA

Nearby chains

Chain B3

30S ribosomal protein S2

Chain E3

30S ribosomal protein S5