HL_6H58_069

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

6H58|1|AA|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_069 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.2072

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6H58|1|AA|U|59
6H58|1|AA|G|60
6H58|1|AA|C|61
6H58|1|AA|U|62
6H58|1|AA|A|63
6H58|1|AA|A|64
6H58|1|AA|U|65
6H58|1|AA|C|66
6H58|1|AA|U|67
6H58|1|AA|G|68

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L34

Chain TT

50S ribosomal protein L23

Chain YY

50S ribosomal protein L29