HL_6H58_081

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_081 not in the Motif Atlas

Geometric match to HL_5J7L_196

Geometric discrepancy: 0.0683

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6H58|1|AA|C|462
6H58|1|AA|G|463
6H58|1|AA|U|464
6H58|1|AA|G|465
6H58|1|AA|A|466
6H58|1|AA|G|467

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L34

Chain EE

50S ribosomal protein L4