HL_6H58_093

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

6H58|1|AA|U|958, 6H58|1|AA|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_093 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2724

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6H58|1|AA|G|954
6H58|1|AA|U|955
6H58|1|AA|G|956
6H58|1|AA|C|957
6H58|1|AA|U|958
6H58|1|AA|A|959
6H58|1|AA|A|960
6H58|1|AA|C|961
6H58|1|AA|G|962
6H58|1|AA|U|963

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain MM

50S ribosomal protein L16