HL_6H58_115

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6H58|1|AA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_115 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1468

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6H58|1|AA|G|1910
6H58|1|AA|U|1911
6H58|1|AA|A|1912
6H58|1|AA|A|1913
6H58|1|AA|C|1914
6H58|1|AA|U|1915
6H58|1|AA|A|1916
6H58|1|AA|U|1917
6H58|1|AA|A|1918
6H58|1|AA|A|1919
6H58|1|AA|C|1920

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain aa

Small subunit ribosomal RNA; SSU rRNA

Chain xx

Ribosome hibernation promoting factor