HL_6H58_116

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6H58|1|AA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_116 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.0935

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6H58|1|AA|G|1949
6H58|1|AA|G|1950
6H58|1|AA|U|1951
6H58|1|AA|A|1952
6H58|1|AA|A|1953
6H58|1|AA|G|1954
6H58|1|AA|U|1955
6H58|1|AA|U|1956
6H58|1|AA|C|1957

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain KK

50S ribosomal protein L14

Chain aa

Small subunit ribosomal RNA; SSU rRNA