HL_6H58_118

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

6H58|1|AA|C|2145, 6H58|1|AA|C|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_118 not in the Motif Atlas

Geometric match to HL_3DIL_004

Geometric discrepancy: 0.3948

The information below is about HL_3DIL_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6H58|1|AA|A|2142
6H58|1|AA|C|2143
6H58|1|AA|G|2144
6H58|1|AA|C|2145
6H58|1|AA|C|2146
6H58|1|AA|A|2147
6H58|1|AA|G|2148
6H58|1|AA|U|2149

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain kk

30S ribosomal protein S11

Chain ww

Transfer RNA; tRNA