HL_6H58_127

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

6H58|1|AA|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_127 not in the Motif Atlas

Geometric match to HL_4V9F_062

Geometric discrepancy: 0.1024

The information below is about HL_4V9F_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6H58|1|AA|A|2471
6H58|1|AA|G|2472
6H58|1|AA|U|2473
6H58|1|AA|U|2474
6H58|1|AA|C|2475
6H58|1|AA|A|2476
6H58|1|AA|U|2477
6H58|1|AA|A|2478
6H58|1|AA|U|2479

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain 44

50S ribosomal protein L36

Chain GG

50S ribosomal protein L6

Chain MM

50S ribosomal protein L16