HL_6H58_177

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6H58|1|aa|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_177 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1007

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6H58|1|aa|G|259
6H58|1|aa|G|260
6H58|1|aa|U|261
6H58|1|aa|A|262
6H58|1|aa|A|263
6H58|1|aa|C|264
6H58|1|aa|G|265
6H58|1|aa|G|266
6H58|1|aa|C|267

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain qq

30S ribosomal protein S17

Chain tt

30S ribosomal protein S20