3D structure

PDB id
6H58 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
7.9 Å

Loop

Sequence
GAUGCAACGC
Length
10 nucleotides
Bulged bases
6H58|1|aa|G|971
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6H58_192 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.0921
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6H58|1|aa|G|963
6H58|1|aa|A|964
6H58|1|aa|U|965
6H58|1|aa|G|966
6H58|1|aa|C|967
6H58|1|aa|A|968
6H58|1|aa|A|969
6H58|1|aa|C|970
6H58|1|aa|G|971
6H58|1|aa|C|972

Current chains

Chain aa
16S ribosomal RNA

Nearby chains

Chain ii
30S ribosomal protein S9
Chain jj
30S ribosomal protein S10
Chain mm
30S ribosomal protein S13
Chain xx
Ribosome hibernation promoting factor

Coloring options:


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