HL_6H58_200

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

6H58|1|aa|U|1364

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_200 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1064

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6H58|1|aa|G|1356
6H58|1|aa|A|1357
6H58|1|aa|U|1358
6H58|1|aa|C|1359
6H58|1|aa|A|1360
6H58|1|aa|G|1361
6H58|1|aa|A|1362
6H58|1|aa|A|1363
6H58|1|aa|U|1364
6H58|1|aa|G|1365
6H58|1|aa|C|1366

Current chains

Chain aa

16S ribosomal RNA

Nearby chains

Chain ii

30S ribosomal protein S9

Chain jj

30S ribosomal protein S10

Chain nn

30S ribosomal protein S14