HL_6H58_206

3D structure

PDB id

6H58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - Full 100S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAGCCGGUAG*G

Length

11 nucleotides

Bulged bases

6H58|1|ww|C|17, 6H58|1|ww|G|18, 6H58|1|ww|G|19, 6H58|1|ww|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6H58_206 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.1635

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6H58|1|ww|C|13
6H58|1|ww|A|14
6H58|1|ww|G|15
6H58|1|ww|C|16
6H58|1|ww|C|17
6H58|1|ww|G|18
6H58|1|ww|G|19
6H58|1|ww|U|20
6H58|1|ww|A|21
6H58|1|ww|G|22
*
6H58|1|ww|G|22

Current chains

Chain ww

tRNA Mixture

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA