HL_6HA1_027

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

6HA1|1|A|U|1004, 6HA1|1|A|G|1007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1389

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6HA1|1|A|U|1001
6HA1|1|A|G|1002
6HA1|1|A|A|1003
6HA1|1|A|U|1004
6HA1|1|A|A|1005
6HA1|1|A|A|1006
6HA1|1|A|G|1007
6HA1|1|A|A|1008

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L16