HL_6HA1_042

3D structure

PDB id

6HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6HA1_042 not in the Motif Atlas

Homologous match to HL_7RQB_043

Geometric discrepancy: 0.3938

The information below is about HL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43656.2

Basepair signature

cWW-tSH

Number of instances in this motif group

8

Unit IDs

6HA1|1|A|U|1764
6HA1|1|A|G|1765
6HA1|1|A|C|1766
6HA1|1|A|A|1767
6HA1|1|A|A|1768
6HA1|1|A|G|1769

Current chains

Chain A

23S ribosomal RNA

Nearby chains